| 01 | Harvard | 100.0 |
| 02 | Chinese Academy of Sciences | 100.0 |
| 03 | Massachusetts Institute of Technology | 83.8 |
| 04 | University of Oxford | 80.0 |
| 05 | University of Cambridge | 73.6 |
| 06 | Stanford University | 67.7 |
| 07 | Tsinghua University | 64.7 |
| 08 | Shanghai Ranking (ARWU) | 63.3 |
| 09 | nature.com Nature Index 2025 Research Leaders | 59.0 |
| 10 | UC Berkeley | 58.8 |
| 11 | the University of Tokyo | 56.5 |
| 12 | Max Planck Society | 53.8 |
| 13 | Peking University | 48.1 |
| 14 | French National Centre for Scientific Research | 45.9 |
| 15 | National Institutes of Health | 45.2 |
| 16 | Imperial College London | 42.8 |
| 17 | Princeton University | 42.5 |
| 18 | CERN | 41.2 |
| 19 | California Institute of Technology | 41.2 |
| 20 | nature.com | 41.0 |
| 21 | ETH Zurich | 39.7 |
| 22 | National University of Singapore | 38.2 |
| 23 | Howard Hughes Medical Institute | 36.8 |
| 24 | Times Higher Education World Reputation Rankings 2025 | 30.0 |
| 25 | Times Higher Education World University Rankings | 30.0 |
| 26 | QS | 30.0 |
| 27 | European Molecular Biology Laboratory | 23.1 |
| 28 | Kyoto University | 22.3 |
| 29 | University of Chicago | 22.2 |
| 30 | RIKEN | 22.2 |